CIF_COMPAT
Version: 0.100 (2020-07-15)
COD_ERROR
This category is considered deprecated and is only retained in this dictionary for compatibility purposes. The COD_ENTRY_ISSUE category from the 'cif_cod.dic' dictionary should be used instead.
Data items from this category flag and describe problems (errors, warnings, etc.) that were discovered in a particular COD entry during deposition, validation or review.
Examples:
Value | Description |
---|---|
| Crystallographic data in COD entry 2107238 has suspicious properties described by the example text. Example based on COD entry 2107238, revision 189123. svn://www.crystallography.net/cod/cif/2/10/72/2107238.cif@189123 [http://www.crystallography.net/cod/2107238.cif@189123](http://www.crystallography.net/cod/2107238.cif@189123) |
| Crystallographic data in COD entry 1100919 has serious error described by the example text. Example based on COD entry 1100919, revision 208252. svn://www.crystallography.net/cod/cif/1/10/09/1100919.cif@208252 [http://www.crystallography.net/cod/1100919.cif@208252](http://www.crystallography.net/cod/1100919.cif@208252) |
_cod_error_flag
This data item is considered deprecated and is only retained in this dictionary for compatibility purposes.
Describes the severity of errors if such are detected in COD entries:
'none': means that the entry is clean and can be used with confidence; normally the data item with this value can be omitted.
'warnings': data or syntax have suspicious properties, or some missing pieces of information, but the main data items (unit cell, coordinates, chemical formula) should be mostly correct.
Warnings may be used to indicate internal
inconsistencies (e.g. mismatches between declared
chemical formula sum and the actual atomic composition)
that do not show an obviously incorrect structure;
unusual bond geometries, valencies, packing voids, etc.
'errors': the file has serious errors; the data are either wrong or unusable due to dictionary non-conformance, obvious data errors, known experimental errors, missing data items.
'retracted': the original paper describing the structure, or the COD CIF file was retracted by authors.
Values:
Value | Description |
---|---|
none | no errors are detected in this entry (may be omitted) |
warnings | some suspicious properties of the data or syntax |
errors | mistakes in the file that make data unusable |
retracted | structure or paper was retracted by authors |
_cod_error_source
This data item is considered deprecated and is only retained in this dictionary for compatibility purposes.
Describes the most distant (i.e. the closest to the data origin) COD source where the origin of the detected problem (error, warning, etc.) can be traced back.
Values:
Value | Description |
---|---|
deposition | Problems were introduced at the stage of structure deposition to the COD. The entry should be corrected after consulting the original data source if it is available. |
upstream | Problems were introduced in the intermediate source (another database, Web site, review publication, etc.) from which the COD obtained data, but the original publication is either not found or is correct. In the latter case, obviously, the problem will be corrected from the original publication, but the erroneous COD entry can be flagged for documentation purposes and committed to the version control repository before correction. |
original | Problem can be traced back to the original publication. Despite the problem in the publication, there are no indications however that the experiment was performed incorrectly. |
experiment | Problems were introduced when performing the experiment. |
unknown | The source of the problem is not known. |
_cod_error_description
This data item is considered deprecated and is only retained in this dictionary for compatibility purposes.
Provides a human-readable description of the problems identified in the COD entry and recorded using items from the COD_ERROR category.
COD_TEXT
Data items in the COD_TEXT category record details about the original source of the crystallographic information in the given entry.
_cod_text
This data item is considered deprecated and is only retained in this dictionary for compatibility purposes.
Details about the original source of the crystallographic information in the given entry.
Examples:
Value | Description |
---|---|
| Crystallographic information in COD entry 6000034 was originally reported in the provided publication. Example based on COD entry 6000034, revision 176292. svn://www.crystallography.net/cod/cif/6/00/00/6000034.cif@176292 [http://www.crystallography.net/cod/6000034.cif@176292](http://www.crystallography.net/cod/6000034.cif@176292) |